STATISTICAL VALIDATION OF TRIPLE COLOCALIZATION ANALYSIS
Background: in the last decades, colocalization analysis of fluorescently tagged biomolecules has proven to be a powerful approach to studying functional relationships between these biomolecules. However, in many cases, to give this analysis a biological meaning, colocalization coefficients must be tested statistically, comparing them with the colocalization expected by chance. Aim: It addressed the statistical significance of triple colocalization to distinguish real triple colocalization and classify different triple signal scenarios. Methods: we use biological and generated images of triple signal scenarios to contrast seven independent statistical facts with independent statistical tests. Three of these tests correspond to pairwise relationships (double scrambling tests), and the others correspond to triple relationships: single scrambling tests (red, green, and blue scrambling) and the triple scrambling test. The analysis and methodology proposed can be reproduced using the application developed in our laboratory. Results: In the study approach, we found true triple relationships ignored by using traditional methods of computing the statistical significance, while we could reinterpret cases of not significant triple colocalization wrongly considered as significant by traditional methods. Discussion: single scrambling tests can reveal significant triple colocalization for low levels of triple co-occurrence, even when all pairwise relationships were exclusion relationships. Moreover, on the other hand, single scrambling tests can reveal the absence of a significant triple colocalization for high levels of triple co-occurrence, even when all pairwise relationships were significant colocalization. Conclusion: all scrambling tests are useful to classify a specific scenario of a triple relationship. Dynamics like mitosis can be distinguished into their phases by triple signal relationships using these 7 independent statistical tests.
Read ArticleADVANCES IN NATURAL EXTRACTS USED FOR ANTIBIOTIC-RESISTANT BACTERIA TREATMENT: THE GRAM-NEGATIVE CASES
Background: Infectious diseases are a global problem, the second human cause of death. Infectious diseases caused by pathogenic bacteria have been treated with a high degree of efficacy. However, even when the 20th century was considered the “golden age” of antibiotics, bacteria developed a different resistance mechanism to antibiotics. In 2017, the WHO issued an alert about 12 bacteria with an urgent need to develop new antibiotics. Aims: The aim of the present review is to analyze the current knowledge of the antibacterial activity of natural extract-based treatments against the pathogens listed by WHO. Methods: A systematic review of the literature in PubMed was performed to search for publications describing the use of natural extracts as antibiotics over bacteria. We focused on the Gram-Negative group. The exclusion criteria consisted of limiting papers on natural extracts tested over the bacteria culture related to eight selected bacteria, according to an alert issued by WHO in 2017, and seven plant extracts. Results: All the Gram-Negative bacteria listed in 2017 by WHO have been treated, with different degrees of advance, with some of the plant extracts and plant-based compounds reviewed. In general, the first approach is using inhibition disks applied over the bacterial biofilm in solid culture media. Discussion: While Salmonellae and P. aeruginosa have been extensively studied, over N. gonorrhoeae, A. baumannii have been tested with fewer natural extracts. Edible herbs are more often used, as well as artemisa and wine byproducts. In all cases, they are in the early stages of study, not being tested in patients at present. Conclusions: Plant extracts and plant-based compounds are effective as antibacterial, with minimal effects on the host cell. Furthermore, they are sustainable, environmentally friendly, and renewable.
Read ArticleFROM ACADEMIA TO INDUSTRY: A JOURNEY OF INNOVATION IN CHEMICAL ENGINEERING - INTERVIEW WITH PROFESSOR FERNANDO LUIZ PELLEGRINI PESSOA. ENGLISH VERSION
Background: The interview with Professor Dr. Fernando Luiz Pellegrini Pessoa covers his extensive career and contributions to chemical engineering, focusing on innovations and sustainability. Objectives: To explore Professor Pellegrini's experiences in various areas of chemical engineering, including teaching methods, research in supercritical extraction, biodiesel production, and process intensification. Methods: Semi-structured interview addressing topics such as academic and industrial career, teaching methods, ongoing research, and future perspectives for the chemical industry. Results: Professor Pellegrini highlighted the importance of practical application of theoretical knowledge, the development of the Water Source Diagram method, advances in supercritical extraction and biodiesel production, and the need for process intensification in the industry. Discussion: The interview revealed the importance of integration between academia and industry, the need for teaching methods that facilitate learning, and the challenges in implementing sustainable and efficient technologies in the chemical industry. Conclusion: Professor Pellegrini emphasizes the importance of process intensification and sustainability in the evolution of the chemical industry. He highlights the need for greater collaboration between academia and industry to address future challenges and implement innovative solutions.
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